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Found 8,761 Skills
Run molecular dynamics (MD) simulations via the FastFold Workflows API. Today supports the CALVADOS+OpenMM workflow (calvados_openmm_v1) from either an existing fold job (AF structure + PAE auto-resolved) or manual PDB+PAE upload, then waits for completion, fetches metrics/plots/CSV artifacts, and extracts trajectory frames as PDB files. Use when running an MD simulation with FastFold, CALVADOS + OpenMM, reading MD metrics/plots, extracting frames, or scripting submit → wait → results for an MD run.
Find, compare, adapt, and design repeatable AI-agent loops with explicit triggers, actions, verification, stopping conditions, guardrails, and handoffs. Use when a user asks for a loop, recurring agent workflow, automation cadence, iterative improvement process, an existing Loop Library recommendation, or help turning an outcome into a bounded copy-ready loop through a short question-led design session.
Trigger when: (1) User mentions "manimgl" or "ManimGL" or "3b1b manim", (2) Code contains `from manimlib import *`, (3) User runs `manimgl` CLI commands, (4) Working with InteractiveScene, self.frame, self.embed(), ShowCreation(), or ManimGL-specific patterns. Best practices for ManimGL (Grant Sanderson's 3Blue1Brown version) - OpenGL-based animation engine with interactive development. Covers InteractiveScene, Tex with t2c, camera frame control, interactive mode (-se flag), 3D rendering, and checkpoint_paste() workflow. NOT for Manim Community Edition (which uses `manim` imports and `manim` CLI).
Multi-agent orchestration framework for autonomous AI collaboration. Use when building teams of specialized agents working together on complex tasks, when you need role-based agent collaboration with memory, or for production workflows requiring sequential/hierarchical execution. Built without LangChain dependencies for lean, fast execution.
GitHub Actions 워크플로우 생성, 보안 및 버전 관리 스킬. 다음 상황에서 사용: (1) 새 워크플로우 파일(.yml) 작성 시, (2) 기존 워크플로우 수정 시, (3) 액션 버전 검토 또는 업데이트 시, (4) CI/CD 보안 감사 시, (5) 'actions/', 'uses:', 'workflow', '.github/workflows' 키워드가 포함된 작업 시
React Flow (@xyflow/react) for workflow visualization with custom nodes and edges. Use when building graph visualizations, creating custom workflow nodes, implementing edge labels, or controlling viewport. Triggers on ReactFlow, @xyflow/react, Handle, NodeProps, EdgeProps, useReactFlow, fitView.
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Vercel AI Elements for workflow UI components. Use when building chat interfaces, displaying tool execution, showing reasoning/thinking, or creating job queues. Triggers on ai-elements, Queue, Confirmation, Tool, Reasoning, Shimmer, Loader, Message, Conversation, PromptInput.
Use this skill when writing, designing, or optimizing Trigger.dev background tasks and workflows. This includes creating reliable async tasks, implementing AI workflows, setting up scheduled jobs, structuring complex task hierarchies with subtasks, configuring build extensions for tools like ffmpeg or Puppeteer/Playwright, and handling task schemas with Zod validation.
This skill should be used for structured feature development with codebase understanding. Triggers on /do command. Provides a 5-phase workflow (Understand, Clarify, Design, Implement, Complete) using codeagent-wrapper to orchestrate code-explorer, code-architect, code-reviewer, and develop agents in parallel.
Use when user asks 'how should I...' or 'what's the best approach...' after exploring code, OR when you've tried to solve something and are stuck, OR for unfamiliar workflows, OR when user references past work. Searches conversation history.