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Found 2,626 Skills
Generate cross-platform installation scripts for any software, library, or module. Use when users ask to "create an installer", "generate installation script", "automate installation", "setup script for X", "install X on any OS", or need automated deployment across Windows, Linux, and macOS. The skill follows a three-phase approach: (1) Environment exploration - detect OS, gather system info, check dependencies; (2) Installation planning - propose steps with verification; (3) Execution with documentation generation.
Patterns for building, maintaining, and scaling bioinformatics workflows. Covers Nextflow, Snakemake, WDL/Cromwell, container orchestration, and best practices for reproducible computational biology. Use when ", " mentioned.
Recommends modularity, composition, and decoupling patterns for design challenges. Use when designing plugin architectures, reducing coupling, improving testability, or separating cross-cutting concerns.
Use when working with SQLiteData library (@Table, @FetchAll, @FetchOne macros) for SQLite persistence, queries, writes, migrations, or CloudKit private database sync.
Manages stakeholder relationships using Kim Scott's Radical Candor and Carole Robin's interpersonal dynamics. Use when giving/receiving feedback, navigating difficult conversations, or building trust across teams.
Creates product strategies using Crossing the Chasm, Playing to Win, and strategic canvas frameworks. Use when defining where to play and how to win, choosing beachhead markets, or connecting tactics to strategy.
Six-phase protocol for adapting methods across research domains
Library for bioinformatics and community ecology statistics. Provides data structures and algorithms for sequences, alignments, phylogenetics, and diversity analysis. Essential for microbiome research and ecological data science. Use for alpha/beta diversity metrics, ordination (PCoA), phylogenetic trees, sequence manipulation (DNA/RNA/Protein), distance matrices, PERMANOVA, and community ecology analysis.
Comprehensive chezmoi dotfile management skill for creating, modifying, and maintaining dotfile templates, configuration files, scripts, and external resources. Use when working with chezmoi for creating new dotfile templates (.tmpl files) with Go template syntax, managing .chezmoi.toml.tmpl configuration and .chezmoidata, configuring .chezmoiexternal files for external resources, writing run_once/run_onchange/run_before/run_after scripts, integrating password managers for secrets, managing cross-platform configurations, and handling conditional logic based on OS/architecture/hostname. This skill includes comprehensive reference documentation for all chezmoi features and can consult the latest chezmoi documentation via Context7.
Comprehensive package and environment management using pixi - a fast, modern, cross-platform package manager. Use when working with pixi projects for (1) Project initialization and configuration, (2) Package management (adding, removing, updating conda/PyPI packages), (3) Environment management (creating, activating, managing multiple environments), (4) Feature management (defining and composing feature sets), (5) Task execution and management, (6) Global tool installation, (7) Dependency resolution and lock file management, or any other pixi-related operations. Supports Python, C++, R, Rust, Node.js and other languages via conda-forge ecosystem.
Schedule tasks with safety; use withoutOverlapping, onOneServer, and visibility settings for reliable cron execution
Temporal.io workflow orchestration for durable, fault-tolerant distributed applications. Use when implementing long-running workflows, saga patterns, microservice orchestration, or systems requiring exactly-once execution guarantees.