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Found 12 Skills
Convert between 8 formats (PDF, DOCX, PPTX, XLSX, TXT, CSV, MD, HTML). Best-effort text extraction, batch processing, and document format transformation.
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
Batch convert documents between multiple formats using a unified pipeline
Guide for using Microsoft MarkItDown - a Python utility for converting files to Markdown. Use when converting PDF, Word, PowerPoint, Excel, images, audio, HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs, Jupyter notebooks, RSS feeds, or Wikipedia pages to Markdown format. Also use for document processing pipelines, LLM preprocessing, or text extraction tasks.
[Utilities] Convert markdown files to Microsoft Word (.docx) with custom styling. Use when generating Word documents from markdown, creating editable documentation, or exporting reports for Microsoft Office.
Convert documents (PDF, Word, Excel, PowerPoint, images, HTML) to Markdown using microsoft/markitdown. Use for document analysis, content extraction, preprocessing for LLMs, or batch document conversion. Supports images with OCR/LLM descriptions, audio transcription, and ZIP archives.
Ingest and transform data files (CSV/JSON/Parquet/Arrow IPC) into Elasticsearch with stream processing, custom transforms, and cross-version reindexing. Use when loading files, batch importing data, or migrating indices across versions — not for general ingest pipeline design or bulk API patterns.
Guidance for recovering data from corrupted or truncated SQLite database files through binary analysis and manual parsing. This skill applies when working with damaged SQLite databases that cannot be opened with standard tools, particularly when corruption is due to binary truncation, incomplete writes, or filesystem errors.
Scan and normalize existing intent/planning files to IDD standard. Auto-fixes mechanical issues (frontmatter, directory structure), tags content issues for pickup. Use /intent-normalize to scan current project, or /intent-normalize <path> for specific directory.
Read/write FASTA, GenBank, FASTQ files. Sequence manipulation (complement, translate). Indexed random access via faidx. For NGS pipelines (SAM/BAM/VCF), use pysam. For BLAST, use gget or blat-integration.
Nature figure preparation: resolution (300+ DPI), formats (AI/EPS/TIFF), RGB color, Helvetica/Arial fonts, lowercase panel labels, image integrity requirements.
Convert any data file to another format: CSV, Parquet, JSON, Excel, GeoJSON, and more. Use when the user says "convert to parquet", "save as xlsx", "export as JSON", "make this a CSV", "turn into parquet", or any variation of format-to-format conversion for data files. Also triggers when the user wants to write Parquet, Excel, or other binary formats that Claude cannot produce natively.