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Database Engineering
A disciplined framework for designing, optimizing, and evolving relational databases in
production. This skill covers schema design, indexing strategies, query optimization,
safe migrations, and operational concerns like connection pooling and partitioning. It is
opinionated about PostgreSQL but most principles apply to any SQL database. The goal is
to help you make the right trade-off at each decision point, not just hand you a syntax
reference.
When to use this skill
Trigger this skill when the user:
- Designs a database schema or needs normalization guidance
- Asks about creating or tuning indexes (composite, partial, covering)
- Wants to understand or optimize a slow query or EXPLAIN plan
- Plans a database migration (adding columns, renaming, dropping, backfilling)
- Implements soft deletes, audit trails, or temporal data patterns
- Sets up connection pooling (PgBouncer, application-level pools)
- Partitions a large table by time, hash, or range
- Chooses between replication strategies (read replicas, logical replication)
- Investigates deadlocks, connection exhaustion, or lock contention
Do NOT trigger this skill for:
- NoSQL / document store design (MongoDB, DynamoDB) - different trade-off space
- ORM-specific configuration questions unrelated to the underlying SQL
Key principles
-
Normalize first, then denormalize with a documented reason - Start in third normal
form. Every denormalization must be a conscious decision backed by a measured
performance requirement, not a guess. Write a comment explaining why.
-
Index for your queries, not your tables - An index that does not serve a query is
write overhead and bloat. Before adding an index, write out the query it serves and
confirm with EXPLAIN ANALYZE that it is actually used.
-
Migrations must be reversible - Every schema change should have a rollback path.
Use the expand-contract pattern for breaking changes: add the new shape, migrate data,
deprecate the old shape, then drop it in a later release.
-
Measure before optimizing - EXPLAIN ANALYZE is the ground truth. Never tune a
query without first reading the plan. A query that looks slow may be fast; a query
that looks fast may be causing invisible downstream load.
-
Plan for growth at schema design time - Ask: "What happens at 100x rows? At 10x
write throughput?" Identify which columns will need indexes, which tables might need
partitioning, and which joins will become expensive before the schema is locked.
Core concepts
Normalization forms
| Form | What it eliminates | When to stop here |
|---|
| 1NF | Repeating groups, non-atomic columns | Almost never - baseline only |
| 2NF | Partial dependencies on composite keys | Rare - get to 3NF |
| 3NF | Transitive dependencies | Default target for OLTP schemas |
| BCNF | Remaining anomalies in 3NF edge cases | When you have overlapping candidate keys |
Denormalize (with intent) for read-heavy aggregations, pre-computed summaries, or when
JOINs across normalized tables are measured to be a bottleneck.
Index types
| Type | Structure | Best for |
|---|
| B-tree | Balanced tree | Equality, range, ORDER BY, IS NULL - the default |
| Hash | Hash table | Equality-only lookups (rarely faster than B-tree in Postgres) |
| GIN | Inverted index | JSONB keys, full-text search, array containment |
| GiST | Generalized search tree | Geometric data, range types, nearest-neighbor |
| BRIN | Block range index | Very large append-only tables sorted by a natural order (e.g. timestamps) |
Composite B-tree indexes follow the
leftmost prefix rule: an index on
serves queries filtering on
,
, or
- but not
alone.
ACID and WAL
ACID (Atomicity, Consistency, Isolation, Durability) guarantees that transactions are
all-or-nothing, maintain invariants, are isolated from each other, and survive crashes.
PostgreSQL implements these via MVCC (Multi-Version Concurrency Control) - readers
never block writers and vice versa.
WAL (Write-Ahead Log) is the mechanism for durability and replication. Every change
is written to the WAL before it hits the data file. Streaming replication ships WAL
segments to replicas. Logical replication decodes WAL into row-level change events.
Connection pooling
Each PostgreSQL connection is a forked OS process (~5-10 MB RAM). At 500 direct
connections, the database is spending more time on connection overhead than queries.
PgBouncer in transaction mode is the standard solution - it multiplexes many
application connections onto a small pool of server connections. Target 10-20 server
connections per core as a starting point.
Read replicas
Streaming replicas receive WAL in near-real-time (seconds of lag typical, configurable).
Use them to offload analytics, reporting, and read-heavy background jobs. Replication
lag means replicas can return stale data - never send reads that require post-write
consistency to a replica.
Common tasks
Design a normalized schema
Start from an e-commerce domain. Identify entities, attributes, and relationships before
writing DDL.
sql
-- 1. Core entities in 3NF
CREATE TABLE customers (
id BIGSERIAL PRIMARY KEY,
email TEXT NOT NULL UNIQUE,
created_at TIMESTAMPTZ NOT NULL DEFAULT now()
);
CREATE TABLE products (
id BIGSERIAL PRIMARY KEY,
sku TEXT NOT NULL UNIQUE,
name TEXT NOT NULL,
price_cents INT NOT NULL CHECK (price_cents >= 0)
);
-- 2. Orders reference customers - foreign key with index
CREATE TABLE orders (
id BIGSERIAL PRIMARY KEY,
customer_id BIGINT NOT NULL REFERENCES customers(id),
status TEXT NOT NULL DEFAULT 'pending'
CHECK (status IN ('pending','confirmed','shipped','cancelled')),
created_at TIMESTAMPTZ NOT NULL DEFAULT now()
);
CREATE INDEX idx_orders_customer_id ON orders(customer_id);
CREATE INDEX idx_orders_status_created ON orders(status, created_at DESC);
-- 3. Junction table for order line items
CREATE TABLE order_items (
id BIGSERIAL PRIMARY KEY,
order_id BIGINT NOT NULL REFERENCES orders(id),
product_id BIGINT NOT NULL REFERENCES products(id),
quantity INT NOT NULL CHECK (quantity > 0),
unit_price_cents INT NOT NULL
);
CREATE INDEX idx_order_items_order_id ON order_items(order_id);
is intentionally denormalized from
. Prices
change over time; the order must record what the customer was charged.
Create effective indexes
sql
-- Composite index: filter first on equality columns, then range/sort
-- Serves: WHERE org_id = ? AND status = ? ORDER BY created_at DESC
CREATE INDEX idx_orders_org_status_created
ON orders(org_id, status, created_at DESC);
-- Partial index: only index the rows you actually query
-- Saves space and stays small even as the table grows
CREATE INDEX idx_orders_pending
ON orders(customer_id, created_at)
WHERE status = 'pending';
-- Covering index: include non-filter columns to avoid heap fetch
-- The query can be answered entirely from the index (index-only scan)
CREATE INDEX idx_products_sku_covering
ON products(sku)
INCLUDE (name, price_cents);
-- Check index usage - drop indexes with low scans
SELECT schemaname, tablename, indexname, idx_scan, idx_tup_read
FROM pg_stat_user_indexes
ORDER BY idx_scan ASC;
Read and optimize EXPLAIN plans
sql
-- Always use EXPLAIN ANALYZE (BUFFERS) for real execution data
EXPLAIN (ANALYZE, BUFFERS, FORMAT TEXT)
SELECT o.id, c.email, sum(oi.quantity * oi.unit_price_cents)
FROM orders o
JOIN customers c ON c.id = o.customer_id
JOIN order_items oi ON oi.order_id = o.id
WHERE o.status = 'pending'
GROUP BY o.id, c.email;
Key things to read in the plan output:
| Signal | What it means | Action |
|---|
| on a large table | No usable index | Add an index on the filter column |
| vs actual | Bad statistics | Run |
| with large | Spilling to disk | Increase or add index |
| with large outer set | N+1 at the SQL level | Rewrite as hash join or batch |
| High | Data in cache - good | No action needed |
| High | Data read from disk | Consider more cache or BRIN index |
Write safe migrations
Use the expand-contract pattern for zero-downtime changes:
sql
-- Phase 1 (expand): add nullable column, old code ignores it
ALTER TABLE orders ADD COLUMN notes TEXT;
-- Phase 2 (backfill): run in batches to avoid locking
DO $$
DECLARE batch_size INT := 1000;
last_id BIGINT := 0;
BEGIN
LOOP
UPDATE orders
SET notes = ''
WHERE id > last_id AND id <= last_id + batch_size AND notes IS NULL;
GET DIAGNOSTICS last_id = ROW_COUNT;
EXIT WHEN last_id = 0;
PERFORM pg_sleep(0.05); -- yield to avoid lock contention
last_id := last_id + batch_size;
END LOOP;
END $$;
-- Phase 3 (contract): add NOT NULL constraint after all rows are filled
ALTER TABLE orders ALTER COLUMN notes SET NOT NULL;
ALTER TABLE orders ALTER COLUMN notes SET DEFAULT '';
Never
ALTER TABLE ... ADD COLUMN ... NOT NULL
without a DEFAULT on Postgres < 11. On
Postgres 11+ it is safe only if the default is a constant. On older versions it rewrites
the entire table and takes an exclusive lock.
Implement soft deletes vs hard deletes
sql
-- Soft delete pattern
ALTER TABLE customers ADD COLUMN deleted_at TIMESTAMPTZ;
-- Partial index keeps active-record queries fast
CREATE INDEX idx_customers_active ON customers(email) WHERE deleted_at IS NULL;
-- Application queries always filter
SELECT * FROM customers WHERE deleted_at IS NULL AND email = $1;
-- Hard delete with archival (for GDPR / data retention)
WITH deleted AS (
DELETE FROM customers WHERE id = $1 RETURNING *
)
INSERT INTO customers_archive SELECT *, now() AS archived_at FROM deleted;
Prefer hard deletes with an archive table for compliance-sensitive data.
Use soft deletes only when you need "undo" semantics or audit trails.
Set up connection pooling
ini
# pgbouncer.ini - transaction mode is best for most web workloads
[databases]
myapp = host=127.0.0.1 port=5432 dbname=myapp
[pgbouncer]
pool_mode = transaction
max_client_conn = 1000 ; application connections in
default_pool_size = 25 ; server connections per database
min_pool_size = 5
reserve_pool_size = 5
server_lifetime = 3600
server_idle_timeout = 600
log_connections = 0 ; disable in high-throughput environments
In
transaction mode, prepared statements and
commands do not persist across
connections. Use
or disable prepared statements in your driver
(
prepared_statement_cache_size=0
in JDBC).
Partition large tables
sql
-- Range partition by month (good for time-series, logs, events)
CREATE TABLE events (
id BIGSERIAL,
created_at TIMESTAMPTZ NOT NULL,
type TEXT NOT NULL,
payload JSONB
) PARTITION BY RANGE (created_at);
CREATE TABLE events_2024_01
PARTITION OF events FOR VALUES FROM ('2024-01-01') TO ('2024-02-01');
CREATE TABLE events_2024_02
PARTITION OF events FOR VALUES FROM ('2024-02-01') TO ('2024-03-01');
-- Automate with pg_partman extension
SELECT partman.create_parent(
p_parent_table => 'public.events',
p_control => 'created_at',
p_type => 'native',
p_interval => 'monthly'
);
-- Partition pruning - Postgres skips partitions outside the WHERE range
EXPLAIN SELECT * FROM events WHERE created_at >= '2024-01-15';
-- Should show: Append -> Seq Scan on events_2024_01 (only one child scanned)
Error handling
| Error | Root cause | Resolution |
|---|
| Two transactions acquiring the same locks in opposite order | Enforce a consistent lock acquisition order; use SELECT ... FOR UPDATE SKIP LOCKED
for queue patterns |
| App creating connections faster than they close | Add PgBouncer; audit connection pool settings; check for connection leaks |
canceling statement due to conflict with recovery
| Long query on replica conflicts with WAL replay | Increase max_standby_streaming_delay
; move analytics to a dedicated replica |
could not serialize access due to concurrent update
| SERIALIZABLE isolation write conflict | Retry the transaction; this is expected behavior, not a bug |
| / slow index scans | Dead tuples not vacuumed, bloated index pages | Run ; tune autovacuum_vacuum_scale_factor
for high-churn tables |
| Query slow after data growth | Missing index or stale planner statistics | Run ; check with EXPLAIN (ANALYZE, BUFFERS)
|
Gotchas
-
ALTER TABLE ... ADD COLUMN ... NOT NULL
locks the table on Postgres < 11 - Without a constant DEFAULT, Postgres rewrites the entire table under an exclusive lock. On Postgres 11+ with a constant default it is safe, but a runtime-computed default still triggers a rewrite. Use the expand-contract pattern instead.
-
Composite index leftmost prefix is strictly enforced - An index on
does not help a query that filters only on
or
. A common mistake is adding an index for a multi-column query and then using it in queries that don't start from the leftmost column. Always verify with
.
-
PgBouncer transaction mode breaks prepared statements - Many ORMs (Prisma, JDBC) use prepared statements by default. In PgBouncer transaction mode, prepared statements don't persist across connections, causing
prepared statement "s1" does not exist
errors. Disable prepared statements in your driver (
prepared_statement_cache_size=0
for JDBC,
pgbouncer_mode: transaction
for Prisma).
-
doesn't reclaim disk space by default - Regular
marks dead tuples as reusable but doesn't shrink the file. Only
returns disk space to the OS, but it acquires an exclusive lock and rewrites the table. Use
for online space reclamation on production tables.
-
Partition pruning only works when the partition key is in the clause - Joining a partitioned table on a non-partition key column causes Postgres to scan all partitions. Always include the partition column in range queries or the planner cannot prune.
References
For detailed patterns and implementation guidance, load the relevant file from
:
references/query-optimization.md
- EXPLAIN ANALYZE deep dive, index types, join
strategies, common bottlenecks
Only load a references file if the current task requires it - they are long and will
consume context.
Companion check
On first activation of this skill in a conversation: check which companion skills are installed by running
ls ~/.claude/skills/ ~/.agent/skills/ ~/.agents/skills/ .claude/skills/ .agent/skills/ .agents/skills/ 2>/dev/null
. Compare the results against the
field in this file's frontmatter. For any that are missing, mention them once and offer to install:
npx skills add AbsolutelySkilled/AbsolutelySkilled --skill <name>
Skip entirely if
is empty or all companions are already installed.